With my previous controller I got into the habit of switching on the Huanyang VFD only when I was about to start machining, doing the tool and zero coordinate setup with the VFD controller off.
I note that in the FluidNC docs on spindles http://wiki.fluidnc.com/en/config/config_spindles under the section on Huanyang (RS485) that the advice is
It is important that the VFD is fully powered on before the the ESP32 is powered on. Some take several seconds before they are ready to communicate. Do not power cycle the VFD when the ESP32 is on. It may interrupt the communications and cause problems.
If the Root Controller and VFD controller are on the same power switch it is almost inevitable that the Root controller will be up and running before the VFD controller.
What is your experience with the power on sequence? Is it necessary to boot the VFD before the Root controller?